PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21922.8 Da    PI: 4.5011
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.3e-19252151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ie+ + rq  +skR+ +ilKK +EL vLCd++v +++fs+ g++  yss
  Sopen07g026340.1  2 KKIEDPTSRQQFYSKRKDTILKKSNELAVLCDVDVGLLMFSPAGEVTSYSS 52
                      68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001201.13E-19152No hitNo description
SMARTSM004324.3E-17153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-19161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.946154IPR002100Transcription factor, MADS-box
PfamPF003191.5E-19350IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-91631IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-93152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MKKIEDPTSR QQFYSKRKDT ILKKSNELAV LCDVDVGLLM FSPAGEVTSY SSKERLEDVM  60
LLAMNKAGEL NKLSPENPNE QALMDSLTQS KHEAEMVEKI AIVEAHEEKL NGVKERLSEA  120
QQKIRYYEPQ VESINSVQEA DAYEKFILSA LELIQLSKAK LLGDQEFLQR NENVAVSSVN  180
AEDMAAEGTS GGWMY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754467e-86HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755197e-86HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774154.11e-141agamous-like MADS-box protein AGL66 isoform X2
RefseqXP_027774155.11e-141agamous-like MADS-box protein AGL66 isoform X2
RefseqXP_027774156.11e-141agamous-like MADS-box protein AGL66 isoform X2
TrEMBLA0A0V0HT181e-125A0A0V0HT18_SOLCH; Putative MADS-box protein defh21-like
TrEMBLA0A3Q7HEN11e-115A0A3Q7HEN1_SOLLC; Formin-like protein
STRINGSolyc07g052720.2.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.19e-21AGAMOUS-like 104