PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 245aa    MW: 28449.4 Da    PI: 5.6348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++l+ +++++G+ +W+  +++ g+ R++k+c++rw ++l
  Sopen07g026840.1 14 KGSWTLEEDKKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWINHL 61
                      799******************************************996 PP
2Myb_DNA-binding56.18.3e-1867111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ T+eEde+++++++qlG++ W+ Ia++++  R+++++k++w++ 
  Sopen07g026840.1  67 RGNYTEEEDEIILNLHAQLGNK-WSMIAAHFP-ERSDNEIKNHWHTT 111
                       899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.08961IPR017930Myb domain
SuperFamilySSF466893.26E-2911108IPR009057Homeodomain-like
SMARTSM007171.1E-91363IPR001005SANT/Myb domain
PfamPF002494.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-221568IPR009057Homeodomain-like
CDDcd001671.10E-71661No hitNo description
PROSITE profilePS5129425.6362116IPR017930Myb domain
SMARTSM007172.9E-1666114IPR001005SANT/Myb domain
PfamPF002494.9E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2569115IPR009057Homeodomain-like
CDDcd001671.07E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVRTTCYDEN GRKKGSWTLE EDKKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWINH  60
LRPNVKRGNY TEEEDEIILN LHAQLGNKWS MIAAHFPERS DNEIKNHWHT TLKKRTATTN  120
NKNNIESNTR RKITSVENQN ASANNNNNNN MHENIVLESS EWSPNESSSE ALSSIDYQQD  180
IFQEELANLE EITSGSFWTQ PFEVDTKIDF VAPSIDYCGL VCPPSPFIPH EFLSSFDFDD  240
CNNYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141187110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081731.10.0transcription factor WER-like
SwissprotQ7XBH43e-49MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A3Q7HFX71e-157A0A3Q7HFX7_SOLLC; Uncharacterized protein
STRINGSolyc07g055000.1.11e-157(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-48myb domain protein 9
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]