PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026860.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 157aa    MW: 18318.8 Da    PI: 10.6862
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026860.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.3e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd++l  +++++G  +W+  +++ g+ R++k+c++rw ++l
  Sopen07g026860.1 14 KGTWTPEEDKKLEAYITKYGCWNWRQLPKYAGLARCGKSCRLRWMNHL 61
                      799*****************99************************97 PP
2Myb_DNA-binding60.24.3e-1967110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+eEdel++++++qlG++ W++Ia +++ gR+++++k++w++
  Sopen07g026860.1  67 RGNYTKEEDELILNLHAQLGNR-WSAIAIHLP-GRSDNEIKNHWHT 110
                       899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.401961IPR017930Myb domain
SuperFamilySSF466895.64E-3011108IPR009057Homeodomain-like
SMARTSM007175.3E-101363IPR001005SANT/Myb domain
PfamPF002497.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-231568IPR009057Homeodomain-like
CDDcd001676.43E-91661No hitNo description
PROSITE profilePS5129426.34762116IPR017930Myb domain
SMARTSM007171.0E-1766114IPR001005SANT/Myb domain
PfamPF002494.5E-1767110IPR001005SANT/Myb domain
CDDcd001679.97E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVRTPSYDEN GRKKGTWTPE EDKKLEAYIT KYGCWNWRQL PKYAGLARCG KSCRLRWMNH  60
LRPNVKRGNY TKEEDELILN LHAQLGNRWS AIAIHLPGRS DNEIKNHWHT SLKKRANYNS  120
SEGSKKCSNK NSGRATTTSW TGKRKPIDYP KPKLRAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30141177109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-71HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081535.11e-95transcription factor MYB14-like
SwissprotQ7XBH43e-51MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A3Q7I9M14e-91A0A3Q7I9M1_SOLLC; Uncharacterized protein
STRINGSolyc07g054980.1.12e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-53myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]