PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g027250.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 255aa    MW: 27659.4 Da    PI: 8.4707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g027250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-1362108354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riN  + +Lr l+P        K++Ka+ L k++ +Ik+L
  Sopen07g027250.1  62 KNHSEAERRRRERINGHLGTLRNLIPGT-----NKMDKAALLAKVIGHIKEL 108
                       58*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.28159108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1462113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1062108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.54E-462110No hitNo description
Gene3DG3DSA:4.10.280.103.0E-1463133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-1265114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEFLSSFNGL NEVYGGFQGI IGNGLSSSSS LVLDNESGEL VKAMVKPGGK GVNPEKALIA  60
LKNHSEAERR RRERINGHLG TLRNLIPGTN KMDKAALLAK VIGHIKELRA NAAEATKGVL  120
VPTDIDEVKV EQQAEGSDGA TYSVKASLCC DYKHELISDL RQALDTLPLK TLRAEIATLG  180
SRMVSVFVIT EGNEGNTEGT ERCQLLITSV RQALRSVLDK FYASEEFSSR STLSSKRRRV  240
SLLNSSSSSS LGDFW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERRRRE
2235239KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080615.10.0transcription factor bHLH30-like
TrEMBLA0A3Q7HEZ90.0A0A3Q7HEZ9_SOLLC; Uncharacterized protein
STRINGSolyc07g053290.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA119892123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-32bHLH family protein