PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g028320.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 205aa    MW: 23394.8 Da    PI: 10.1765
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g028320.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-1967121256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ ++tkeq + Le+ F+++ ++   +++eLA+kl+L+ rqV vWFqNrRa+ k
  Sopen07g028320.1  67 RKKLRLTKEQSTLLEDSFKQHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 121
                       678899***********************************************98 PP
2HD-ZIP_I/II1149.5e-3767155189
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       +kk+rl+keq++lLE+sF+++++L   +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e++k+++++l++en+rL+ke +eLr+
  Sopen07g028320.1  67 RKKLRLTKEQSTLLEDSFKQHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFMKKWCQSLNDENNRLKKELQELRS 155
                       69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-1845124IPR009057Homeodomain-like
SuperFamilySSF466897.7E-1857124IPR009057Homeodomain-like
PROSITE profilePS5007116.60163123IPR001356Homeobox domain
SMARTSM003891.6E-1565127IPR001356Homeobox domain
PfamPF000463.7E-1667121IPR001356Homeobox domain
CDDcd000861.61E-1367124No hitNo description
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PfamPF021832.3E-9123155IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-17123166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGNNSNEACD TRLTLGLATS DHHKKKITCL DLSIIPLHDT SKIDGSSSKT CKNYTKFNSE  60
SKKIGMRKKL RLTKEQSTLL EDSFKQHTTL AMGQKQELAA KLKLKPRQVE VWFQNRRART  120
KLKQTEVDCE FMKKWCQSLN DENNRLKKEL QELRSIKIDQ RAPTPFHLSK TKTLVLCSSC  180
QKISGGDTDE KHETGLDDGL SKRAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-153HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774347.11e-149homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-45HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A3Q7I9B21e-145A0A3Q7I9B2_SOLLC; Uncharacterized protein
STRINGSolyc07g054380.1.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-44HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]