PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g029070.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 388aa    MW: 44476.2 Da    PI: 5.9839
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g029070.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-34161062101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+ye+++d+ ++ ++sws+ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF++++F +g+++ll
  Sopen07g029070.1  16 FLLKTYELVDDSYTNPVVSWSHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEEFLRGQRHLL 99 
                       9***************************************************************9998.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i r+k
  Sopen07g029070.1 100 KNIYRRK 106
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-388100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-5912105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDNCNGGSSS SSPAPFLLKT YELVDDSYTN PVVSWSHNGR SFVVWNPPEF ARDLLPKYFK  60
HNNFSSFIRQ LNTYGFRKVD PEQWEFANEE FLRGQRHLLK NIYRRKPIHS HSATGTGQSV  120
APLTDSERQE YEDEIERLKR ENSLLQSSAE NQEKFNVEYE SGIKSMEQRL QNVAHRQGKL  180
ISLLAQLLQT PGFSSDFTQS ASRKRRLLVS NYLIDEENAP KLDLEMVKKL DSSINFWERF  240
LYGVQTQDFE HSPIVIQTSS NDSAKRNSPI DHSPSSSELR PLSPVMSSTY ENLERQLKPS  300
DNQIDHVECK TSKTSELVSN SGNDVFWQQF LTETPGCTEP QQVENKGINE STCDIRLGDN  360
HRYWWNRGVN LENLAERMGH LSSPATGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-23610519129Heat shock factor protein 1
5d5v_B1e-23610519129Heat shock factor protein 1
5d5v_D1e-23610519129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081094.10.0heat stress transcription factor A-4c-like
TrEMBLA0A3Q7HDC10.0A0A3Q7HDC1_SOLLC; Uncharacterized protein
STRINGSolyc07g055710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-84HSF family protein