PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g031010.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 174aa MW: 20300.1 Da PI: 8.296

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g031010.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.2e-18	17	71	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++++eq++ Le+ F ++++++ e++ +L+++lg++ rq+++W+qNrRa++k+ Sopen07g031010.1 17 NKKRLNQEQVKLLEASFDSTKKLDLEKKLQLSRELGVPPRQISIWYQNRRARWKN 71 56789************************************************95 PP
2	HD-ZIP_I/II	99	4.5e-32	17	108	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqvklLE sF++++kL+ e+K +l+reLg+ prq+ +W+qnrRAR+k++ +E+dy+aL+ ++++ +e+ +Leke++ L+ el++ Sopen07g031010.1 17 NKKRLNQEQVKLLEASFDSTKKLDLEKKLQLSRELGVPPRQISIWYQNRRARWKNQSMENDYNALQLKLENALSEKMQLEKETKILQGELEK 108 79*************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.115	12	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-17	13	81	IPR009057	Homeodomain-like
SMART	SM00389	6.3E-17	14	76	IPR001356	Homeobox domain
CDD	cd00086	6.17E-14	15	73	No hit	No description
Pfam	PF00046	8.7E-16	17	71	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-19	19	79	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	47	70	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MNSSFNSQNL QKYSKHNKKR LNQEQVKLLE ASFDSTKKLD LEKKLQLSRE LGVPPRQISI 60 WYQNRRARWK NQSMENDYNA LQLKLENALS EKMQLEKETK ILQGELEKAN EMLIGLKSGA 120 QGQIREFTLS TCCEDLISYS TTTWVPNDEV NYSNLQFDEL YAMIGMSNKC CSTW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791458.1	5e-72	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
Refseq	XP_016444534.1	5e-72	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A3Q7HHD8	1e-122	A0A3Q7HHD8_SOLLC; Uncharacterized protein
STRING	Solyc07g062790.1.1	1e-122	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	1e-30	homeobox protein 52