PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g032140.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 224aa MW: 25956.9 Da PI: 3.9802

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g032140.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	32.6	2.2e-10	131	217	12	98
DUF573 12 eivlLqGlidfkaktgkspsd.didafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++++L+++ d++ sp+ ++ +vk+s ++k+s++ l eKi L k f++ +++ g++p+++++ d++if+ls++iWg+ Sopen07g032140.1 131 NLAILKAMCDYECIIRNSPQLsSFNNRLVYVKDSFpDLKMSREALEEKIIALCKNFNDVREQ--LGDDPRMDRPIDREIFNLSMIIWGT 217 489******988777666558999999999998469*******************9..*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MLPAIGHTDE EEEGQNGNRN SEQRETEEAG GNQLGETDED RNDDYEEEDE EHMENLGSGN 60 NVNHQNSEEN ESGNQESYDE NHTSWLVVVE EVEDDEEEER RAAEKGKQLM DDEGGISITE 120 LHDEDEDHHL NLAILKAMCD YECIIRNSPQ LSSFNNRLVY VKDSFPDLKM SREALEEKII 180 ALCKNFNDVR EQLGDDPRMD RPIDREIFNL SMIIWGTKEI PRWK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7HF32	1e-122	A0A3Q7HF32_SOLLC; Uncharacterized protein
STRING	Solyc07g064000.1.1	1e-122	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17221	5	5