PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g001780.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BES1

Protein Properties

Length: 667aa MW: 75452.6 Da PI: 6.1768

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g001780.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	159.3	2.6e-49	60	202	3	143
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 + rk+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+ve+DGtt+r+ p ++a+ +g+ + +s+es+++ Sopen08g001780.2 60 KSRKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPVRADMNDVLAALARQAGWTVEPDGTTFRQTPAPVNNASNMGTYQVMSVESPVS 152 579**************************************************************************************** PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvl 143 ss +++++++ v+ + ++++ ++++sp+s+dsi ++++ +++ +++s+ Sopen08g001780.2 153 gSSFRNCSTRASVDCQPSVTRINESLSPASFDSIVVTESdTKVDKFTSTS 202 ********************************9998864444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.6E-50	60	205	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	6.74E-156	229	661	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.5E-168	230	661	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.9E-82	254	624	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.0E-52	269	283	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.0E-52	290	308	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.0E-52	312	333	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.0E-52	405	427	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.0E-52	478	497	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.0E-52	512	528	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.0E-52	529	540	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.0E-52	547	570	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.0E-52	583	605	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MSNPHHHISN TQDPDPQFPN PNDDPNPNHP LQPQSNPQPR RPRGFAATSA AAAATGTINK 60 SRKEREKEKE RTKLRERHRR AITSRMLAGL RQYGNFPLPV RADMNDVLAA LARQAGWTVE 120 PDGTTFRQTP APVNNASNMG TYQVMSVESP VSGSSFRNCS TRASVDCQPS VTRINESLSP 180 ASFDSIVVTE SDTKVDKFTS TSPMNSTGCL EAGQLMQELH CGEHGGSFSE TQYIPVFVML 240 SQSGVINNFC QLMDPDGVKQ ELQQLKSLKI DGVVVNCWWG IVESWVPQKY EWSGYRELFK 300 IIRDFYMKLQ VVMAFHENGG SDTGGMFISL PQWVLEIGKD NQDIFFTDHQ GRRNTECLSW 360 GIDKERVLRG RTAIEVYFDL MRSFRTEFDD LFADGLISAV EIGLGASGEL KYPSFSERMG 420 WRYPGIGEFQ CYDKYSLQNL RKAATSRGHS FWAKGPDNAG FYNAKPHETG FFCERGDYDS 480 YYGRFFLHWY RQVLIDHADN VLTLASLAFE GIQIVVKIPS IYWWYRTSSH AAELTAGYYN 540 PTNQDGYSPV FEVLKKHSVT IKFVSSGLQV PETDDALADP EGLSWQIMNS AWDKEINVAG 600 QNAFPCYDRE GFMRLVETAK PRNDPDRHRF SFFAFQQPSP LVQSAICFSE LDYFIKCMHG 660 EINNVES

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MSNPHHHISN TQDPDPQFPN PNDDPNPNHP LQPQSNPQPR RPRGFAATSA AAAATGTINK  60
SRKEREKEKE RTKLRERHRR AITSRMLAGL RQYGNFPLPV RADMNDVLAA LARQAGWTVE  120
PDGTTFRQTP APVNNASNMG TYQVMSVESP VSGSSFRNCS TRASVDCQPS VTRINESLSP  180
ASFDSIVVTE SDTKVDKFTS TSPMNSTGCL EAGQLMQELH CGEHGGSFSE TQYIPVFVML  240
SQSGVINNFC QLMDPDGVKQ ELQQLKSLKI DGVVVNCWWG IVESWVPQKY EWSGYRELFK  300
IIRDFYMKLQ VVMAFHENGG SDTGGMFISL PQWVLEIGKD NQDIFFTDHQ GRRNTECLSW  360
GIDKERVLRG RTAIEVYFDL MRSFRTEFDD LFADGLISAV EIGLGASGEL KYPSFSERMG  420
WRYPGIGEFQ CYDKYSLQNL RKAATSRGHS FWAKGPDNAG FYNAKPHETG FFCERGDYDS  480
YYGRFFLHWY RQVLIDHADN VLTLASLAFE GIQIVVKIPS IYWWYRTSSH AAELTAGYYN  540
PTNQDGYSPV FEVLKKHSVT IKFVSSGLQV PETDDALADP EGLSWQIMNS AWDKEINVAG  600
QNAFPCYDRE GFMRLVETAK PRNDPDRHRF SFFAFQQPSP LVQSAICFSE LDYFIKCMHG  660
EINNVES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-121	233	661	11	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085911.1	0.0	beta-amylase 8 isoform X5
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A3Q7IDQ8	0.0	A0A3Q7IDQ8_SOLLC; Beta-amylase
STRING	Solyc08g005780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1607	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]