PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002170.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 359aa    MW: 41989.7 Da    PI: 9.8604
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.6e-141696999
                      HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +k+g + +p  f+ ++ +g   e+++  +  + g++W++kl  + ++   + +++W +Fv++n+L+ gD +vF+++g++ef   v vf++
  Sopen08g002170.1 16 PGFKNG-IKIPIGFL-KYlKGY--EHIKRAVLKRGGKKWRIKL--NEHR---FEESNWGKFVEENDLQLGDLLVFRHEGNMEF--EVYVFDS 96
                      556666.99*****9.564555..4567788899*********..8887...789***********************99999..8888876 PP
2B3451.9e-14146221987
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       + l+++ ++lp kfa+++g+++++   l+++de+ rsW++kl    + +++++++ W e  +an++kegD ++Fk++ +
  Sopen08g002170.1 146 YCLSKCYFRLPGKFARANGLINKK-CSLIIRDEKRRSWSLKL--YTSYSQVYIGGRWAELRDANDIKEGDHITFKVVAN 221
                       67899*************888544.58***************..66667889***********************7754 PP
3B342.99e-14266353496
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         ++s++l+++ l++p +fa+ +g+k+ ++ t+t++d + rsW++kl    ++  + + + W +F+    LkegD ++F+  + +++++ +k+
  Sopen08g002170.1 266 CIMKSYYLSKCFLRVPVSFARLNGLKN-RTCTITIRD-KRRSWTFKL--YARGVNTCIVGEWHKFCIVSCLKEGDYLMFEILD-NGEKPILKF 353
                       5689****************9999885.5669**999.88*******..555555667779*******************665.555566655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-18399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-195103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125797IPR003340B3 DNA binding domain
CDDcd100174.94E-14895No hitNo description
SMARTSM010191.1E-131097IPR003340B3 DNA binding domain
PfamPF023629.4E-111895IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-13134228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-16137236IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-8138232IPR003340B3 DNA binding domain
PROSITE profilePS5086310.8138232IPR003340B3 DNA binding domain
CDDcd100175.24E-12144217No hitNo description
PfamPF023621.7E-12145222IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-17260354IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-17260354IPR015300DNA-binding pseudobarrel domain
CDDcd100172.76E-13262354No hitNo description
PROSITE profilePS5086310.32263356IPR003340B3 DNA binding domain
SMARTSM010195.4E-15264357IPR003340B3 DNA binding domain
PfamPF023625.2E-12267353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MKIPSKKPHF FKPILPGFKN GIKIPIGFLK YLKGYEHIKR AVLKRGGKKW RIKLNEHRFE  60
ESNWGKFVEE NDLQLGDLLV FRHEGNMEFE VYVFDSSQCD REYAEYLQEE GGGGRAQTVE  120
EISKEFEYKE ATTRNQSHVV CKVRGYCLSK CYFRLPGKFA RANGLINKKC SLIIRDEKRR  180
SWSLKLYTSY SQVYIGGRWA ELRDANDIKE GDHITFKVVA NGKMPIWEFH TNVTEKSKRN  240
IMSSHEAFCN IEAAKDNPLS HPHFVCIMKS YYLSKCFLRV PVSFARLNGL KNRTCTITIR  300
DKRRSWTFKL YARGVNTCIV GEWHKFCIVS CLKEGDYLMF EILDNGEKPI LKFHGKFLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-180HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085026.10.0B3 domain-containing protein REM8-like isoform X1
TrEMBLM1AKH20.0M1AKH2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246730.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-42B3 family protein