PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002170.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 158aa    MW: 18041.8 Da    PI: 10.2232
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002170.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1657142593
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +++++  ++ l++p  fa+++g   ++ ++++l+de+ r W v+l     s+  + +  GW++F +an++++gD++ F+l+++++ ++v
  Sopen08g002170.3  57 IIKPYSIFKHFLYIPLAFAKSNGWM-NRRFEMILMDEQQRLWPVRL--GPVSDDhIGIHIGWQKFKEANDVQVGDICRFELINNEK-KPV 142
                       55777778888***********654.4679****************..55555548899**********************98644.455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-2048146IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1948146IPR015300DNA-binding pseudobarrel domain
CDDcd100178.19E-1952147No hitNo description
PROSITE profilePS5086311.98453148IPR003340B3 DNA binding domain
SMARTSM010191.5E-1353149IPR003340B3 DNA binding domain
PfamPF023623.2E-1556146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MRRNASRQPE GKKINLDAKS VSTEATGVKI KTSFETAPKA LPASLSANDA SPYFISIIKP  60
YSIFKHFLYI PLAFAKSNGW MNRRFEMILM DEQQRLWPVR LGPVSDDHIG IHIGWQKFKE  120
ANDVQVGDIC RFELINNEKK PVAYFHRIYS GKDAKQSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-130HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774575.11e-113B3 domain-containing protein REM17-like isoform X2
TrEMBLM1AKH11e-102M1AKH1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000246734e-98(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-11B3 family protein