PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g002200.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 117aa MW: 13815.6 Da PI: 5.0005

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g002200.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.8	1.7e-12	2	50	43	99
S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 g++W +k+ ++ + l++GW++F+++++L++gD++vFk++g++ef v +f++ Sopen08g002200.1 2 GKKWLMKV--NGWR----LEEGWEKFAEEHDLQSGDILVFKHEGDMEF--EVPIFDS 50 89999999..5555....9***********************999999..8888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.493	1	51	IPR003340	B3 DNA binding domain
CDD	cd10017	2.44E-11	2	49	No hit	No description
SuperFamily	SSF101936	1.02E-13	2	57	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.0E-14	2	59	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.4E-9	2	50	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MGKKWLMKVN GWRLEEGWEK FAEEHDLQSG DILVFKHEGD MEFEVPIFDS SHCDREYTEY 60 LLEGVDNAEE TFKKVEFKEA ASHNCWGQSH YQCIVRPNYI SNGYLRLLKV LPTRNVV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	1e-128	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015084058.1	5e-70	putative B3 domain-containing protein REM15
TrEMBL	A0A3Q7HK07	7e-63	A0A3Q7HK07_SOLLC; Uncharacterized protein
TrEMBL	M1AKH8	5e-64	M1AKH8_SOLTU; Uncharacterized protein
STRING	Solyc08g006230.2.1	6e-67	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31680.1	1e-14	B3 family protein