PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002210.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 128aa    MW: 14482.5 Da    PI: 8.4851
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.6e-161999587
                      -..-HHHHTT-E..E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3  5 ltpsdvlksgrl..vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                      +++++++++++l  +lp +f++++g+ +++  +++l de+ rsW+v l   +++ ++ +++GW +F +an +++gD+  F+l+++
  Sopen08g002210.1 19 TIKPYAFTKALLvrYLPMDFVKSNGLMSRS--EMILIDEKQRSWSVWL--VRTGHQFGFKRGWTQFRNANSIQVGDTYKFELTNN 99
                      457888888877778*********998555..8***************..999999*************************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-208111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-2011109IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-1414107No hitNo description
PROSITE profilePS5086312.35117110IPR003340B3 DNA binding domain
PfamPF023622.7E-132099IPR003340B3 DNA binding domain
SMARTSM010193.4E-1325113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MSQTPASTSA DTNPHFISTI KPYAFTKALL VRYLPMDFVK SNGLMSRSEM ILIDEKQRSW  60
SVWLVRTGHQ FGFKRGWTQF RNANSIQVGD TYKFELTNNG TIPIAHVNIL EVEGCESPSI  120
TEAIDKII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-122HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888236.12e-74B3 domain-containing protein REM10-like isoform X1
TrEMBLM1AKH68e-67M1AKH6_SOLTU; Uncharacterized protein
STRINGSolyc08g006220.2.13e-51(Solanum lycopersicum)
STRINGSolyc08g006230.2.11e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-14B3 family protein