PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002250.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 645aa    MW: 74807.8 Da    PI: 7.5932
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002250.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72e-13169252197
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       ffk l     +k++ l +p  f+ ++ +g +e++    l  + g++W vkl  ++++    l++GW +F+++++Lk gD+++F+++g+ ef  
  Sopen08g002250.3 169 FFKPL--LPGFKNS-LKIPDGFL-KYlEGCEEKG--RALLKKGGKKWVVKL--NGQK----LEEGWGQFAEEHDLKLGDMLIFRHEGDLEF-- 247
                       66777..6677776.********.5557776665..677799*********..8888....***********************8886555.. PP

                       EEEEE CS
                B3  93 vvkvf 97 
                        v+vf
  Sopen08g002250.3 248 DVTVF 252
                       77776 PP
2B346.56.4e-15300380588
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       +++++ l++g l++p kfa+++g+ + ++  l+++de+ rsW++++    + +++++++ W+eF  an++k gD ++F+++++ 
  Sopen08g002250.3 300 TVKPYCLRNGYLRVPCKFAKANGLTN-KECGLIIRDERQRSWNLRI--YTSCSQVYIGGRWSEFRAANDIKKGDQIMFEVVSNG 380
                       568999****************7664.3346999************..88888999***********************88763 PP
3B342.31.3e-13431515694
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       ++ + l++g l++p kfa+++ +  +++ +l+++de+ rsW++++    + + + +++ W++ + an++k+gD ++F+++  +++++v 
  Sopen08g002250.3 431 VKQYFLANGYLRVPSKFAKANCLT-NKNYDLIIRDERQRSWNLRI--YTSCSLVCIGGRWSQLCAANDIKAGDQIMFEVVT-NGKQPVW 515
                       5788999**************544.46789***************..77776799***********************876.4444555 PP
4B353.44.6e-17552634591
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       +++++  ++g l+lpk+f  ++g+++++   l+++de+ rsW+++l y+ +s  ++l+ GW+eF+ an+LkegD ++F+++  ++++
  Sopen08g002250.3 552 FLRPYCISKGYLRLPKQFSMANGLINKK-CGLIIRDERERSWNLRL-YTHNSIVHILG-GWSEFCVANDLKEGDYMMFEVVV-NGEK 634
                       567889999**********9**777544.47999************.89999999999.********************765.3444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-18162256IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.28166255IPR003340B3 DNA binding domain
CDDcd100175.03E-10167253No hitNo description
SuperFamilySSF1019367.06E-18167261IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-13169255IPR003340B3 DNA binding domain
PfamPF023628.4E-10177251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-16294384IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.7E-7296391IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-16296385IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.011296390IPR003340B3 DNA binding domain
PfamPF023622.4E-13299382IPR003340B3 DNA binding domain
CDDcd100171.96E-12302375No hitNo description
Gene3DG3DSA:2.40.330.105.1E-15421515IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-15422515IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.56426520IPR003340B3 DNA binding domain
SMARTSM010199.0E-7427521IPR003340B3 DNA binding domain
CDDcd100172.22E-9427505No hitNo description
PfamPF023621.0E-11431517IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-17546639IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-19547640IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.943548642IPR003340B3 DNA binding domain
SMARTSM010191.7E-15549643IPR003340B3 DNA binding domain
PfamPF023622.5E-15552637IPR003340B3 DNA binding domain
CDDcd100172.83E-14552627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MEANTSRMVT LNGVNDVIWK GKMEDLLYVK NFYKPVFTTV KPDNMTDEEW NLLHRQKKYI  60
ERVLERFNMK NAKPVSIPLA GHMKLSKKMC PTAREEKENM AKVPYFSVVG SLMYAMVCTR  120
PDIAQAVGVV SRFLENPEKE HWEAVKWILS SIYCILFAAM EVTSVQPHFF KPLLPGFKNS  180
LKIPDGFLKY LEGCEEKGRA LLKKGGKKWV VKLNGQKLEE GWGQFAEEHD LKLGDMLIFR  240
HEGDLEFDVT VFNLSHCDRE YAEYEEEEEE VRTVEETSTN FEFKEGSTHI PFGQSQFICT  300
VKPYCLRNGY LRVPCKFAKA NGLTNKECGL IIRDERQRSW NLRIYTSCSQ VYIGGRWSEF  360
RAANDIKKGD QIMFEVVSNG EQPIWNFHEY AKNLQQEETE AYTFEETCKK LELNEAAPHD  420
PSDQSQFVYT VKQYFLANGY LRVPSKFAKA NCLTNKNYDL IIRDERQRSW NLRIYTSCSL  480
VCIGGRWSQL CAANDIKAGD QIMFEVVTNG KQPVWKIHHL TNPSTVEEPS ENSVFKETAP  540
HNPIGQSHFE CFLRPYCISK GYLRLPKQFS MANGLINKKC GLIIRDERER SWNLRLYTHN  600
SIVHILGGWS EFCVANDLKE GDYMMFEVVV NGEKPIWKFH SKFLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-173HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085508.10.0B3 domain-containing protein REM14-like isoform X2
TrEMBLA0A3Q7HH760.0A0A3Q7HH76_SOLLC; Uncharacterized protein
STRINGXP_009597618.11e-176(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-50B3 family protein