PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002250.4
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 200aa    MW: 23400.1 Da    PI: 9.0957
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002250.4genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-1310663293
                      --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                      +   l+++de+ rsW+++l y+ +s  ++l+ GW+eF+ an+LkegD ++F+++  +++++ 
  Sopen08g002250.4 10 C--GLIIRDERERSWNLRL-YTHNSIVHILG-GWSEFCVANDLKEGDYMMFEVVV-NGEKPI 66
                      4..4899************.89999999999.********************765.444455 PP
2B349.67.2e-1699181591
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                       +++++ l+ g l+lpk+fa ++g++  ++ +++++de+ rsW++ l  r  + ++ l++GW +F +a  LkegD ++F+++ + +++
  Sopen08g002250.4  99 TIKPYCLTYGYLCLPKQFAFRNGLIR-KKCDVIIRDERQRSWNLIL--RPFGTSVCLRGGWDKFREAYCLKEGDRIMFEVVTD-GEK 181
                       678999999*************9996.5569***************..*******************************8764.333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.224172IPR003340B3 DNA binding domain
SMARTSM010190.043173IPR003340B3 DNA binding domain
CDDcd100176.31E-10257No hitNo description
SuperFamilySSF1019362.35E-13569IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-12769IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-111069IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-1791185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1892186IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.39295189IPR003340B3 DNA binding domain
SMARTSM010193.8E-1396190IPR003340B3 DNA binding domain
PfamPF023621.5E-1399182IPR003340B3 DNA binding domain
CDDcd100174.41E-13100174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MANGLINKKC GLIIRDERER SWNLRLYTHN SIVHILGGWS EFCVANDLKE GDYMMFEVVV  60
NGEKPIWKFH NKPTPSIKSS RNVEAANHKP ADHSRFVCTI KPYCLTYGYL CLPKQFAFRN  120
GLIRKKCDVI IRDERQRSWN LILRPFGTSV CLRGGWDKFR EAYCLKEGDR IMFEVVTDGE  180
KPIWKFHGKI SWENVSIIEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-127HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085510.11e-146B3 domain-containing protein REM17-like isoform X4
TrEMBLA0A0V0HWG41e-136A0A0V0HWG4_SOLCH; Putative B3 domain-containing protein REM14-like (Fragment)
TrEMBLA0A3Q7HH761e-130A0A3Q7HH76_SOLLC; Uncharacterized protein
STRINGXP_009612433.13e-84(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-20B3 family protein