PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002250.5
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 147aa    MW: 17193 Da    PI: 9.0534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002250.5genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83e-1646129592
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       +++++ l+ g l+lpk+fa ++g++  ++ +++++de+ rsW++ l  r  + ++ l++GW +F +a  LkegD ++F+++ + ++++
  Sopen08g002250.5  46 TIKPYCLTYGYLCLPKQFAFRNGLIR-KKCDVIIRDERQRSWNLIL--RPFGTSVCLRGGWDKFREAYCLKEGDRIMFEVVTD-GEKP 129
                       678999999*************9996.5569***************..*******************************8764.4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1738132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-1839134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.39242136IPR003340B3 DNA binding domain
SMARTSM010193.8E-1343137IPR003340B3 DNA binding domain
PfamPF023626.7E-1446129IPR003340B3 DNA binding domain
CDDcd100171.71E-1347121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MISPTKNVVW LLEIEDKDKP TPSIKSSRNV EAANHKPADH SRFVCTIKPY CLTYGYLCLP  60
KQFAFRNGLI RKKCDVIIRD ERQRSWNLIL RPFGTSVCLR GGWDKFREAY CLKEGDRIMF  120
EVVTDGEKPI WKFHGKISWE NVSIIEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-128HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085510.12e-89B3 domain-containing protein REM17-like isoform X4
RefseqXP_015085511.11e-89B3 domain-containing protein REM14-like isoform X5
TrEMBLA0A0V0HNX94e-83A0A0V0HNX9_SOLCH; Putative B3 domain-containing protein REM14-like
TrEMBLA0A0V0HWG41e-82A0A0V0HWG4_SOLCH; Putative B3 domain-containing protein REM14-like (Fragment)
STRINGXP_009612446.16e-61(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.12e-15B3 family protein