PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g002440.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 193aa    MW: 22671.9 Da    PI: 9.4525
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g002440.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.6e-151395499
                      E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                             +k+g l +p  f+ ++ +g+   +++  +  + g +W++k+  ++++    +++GW eFv+++gLk gD+++F+++g++ef   v++f
  Sopen08g002440.1 13 PI--QPGFKNG-LKIPIGFL-KYlKGN--DNVEHAILKRGGYKWSMKV--NGHR----FEAGWVEFVEQHGLKLGDILMFRHEGNMEF--EVSIF 93
                      44..4556665.********.555666..567889999**********..7777....9************************99999..99999 PP

                      -S CS
                B3 98 rk 99
                      ++
  Sopen08g002440.1 94 DS 95
                      86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-21398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.41E-21398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.449796IPR003340B3 DNA binding domain
CDDcd100173.75E-15894No hitNo description
SMARTSM010193.7E-161096IPR003340B3 DNA binding domain
PfamPF023625.1E-121895IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MKIPPKKPHF FKPIQPGFKN GLKIPIGFLK YLKGNDNVEH AILKRGGYKW SMKVNGHRFE  60
AGWVEFVEQH GLKLGDILMF RHEGNMEFEV SIFDSSHCDR EYVEYMEEVG DHTREEIPKK  120
FKFEEDATER PRQKIKSSRK ASSHIIKAAN HHKSFGHSHV ECTIREYSIS RGYLVSFEIH  180
YYLQTLQVNV LHN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-171HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774851.11e-126B3 domain-containing protein REM9-like
TrEMBLA0A3Q7HHD91e-120A0A3Q7HHD9_SOLLC; Uncharacterized protein
STRINGSolyc08g006490.1.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-18B3 family protein