PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g003740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 244aa    MW: 27406.7 Da    PI: 4.7155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g003740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1849100156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       + y+GVr++  +++Wv+e+r+ps+   +kr++lg++ t+e+Aa+a++ a+++l+g+
  Sopen08g003740.1  49 PVYRGVRRRN-NNKWVCELREPSQ---QKRIWLGTYSTPEMAARAHDVAALALRGN 100
                       68*****887.8*********954...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-134999IPR001471AP2/ERF domain
SMARTSM003802.2E-2750113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2850109IPR001471AP2/ERF domain
PROSITE profilePS5103221.27250107IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2150109IPR016177DNA-binding domain
PRINTSPR003672.5E-75162IPR001471AP2/ERF domain
CDDcd000186.55E-2951109No hitNo description
PRINTSPR003672.5E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MNNNSSLYSS DINPLSATTP SNEEGILLLA SSQPKKRAGR KKFKETRHPV YRGVRRRNNN  60
KWVCELREPS QQKRIWLGTY STPEMAARAH DVAALALRGN LATLNFADSR WGLPVPASKD  120
PKDIRQAAVM AAQAFSQDTE LVGVDYMNEE VNSNTIDEIK YQEIDIARAN DGSSSDFGAK  180
ELCIDMENIL CCNWGEDNDM LEMEGWQEKM AKGLLFSPTP RLGSCFSWDD VESDVEVSLW  240
SYSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083759.10.0dehydration-responsive element-binding protein 1E-like
TrEMBLA0A3Q7HI060.0A0A3Q7HI06_SOLLC; Uncharacterized protein
STRINGSolyc08g007820.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-43C-repeat-binding factor 4