PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g004350.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 232aa MW: 25988.8 Da PI: 8.0279

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g004350.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.4e-38	25	84	4	63
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 + ++cprC+stntkfCyynnyslsqPr+fCk+CrryWt GG+lrn+P+Gg +rk+kksss Sopen08g004350.1 25 ALKNCPRCNSTNTKFCYYNNYSLSQPRFFCKNCRRYWTDGGSLRNIPIGGVSRKSKKSSS 84 5679****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-22	16	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-33	26	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.81	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEEMKIPKNT NTRKIRAQQQ QNDEALKNCP RCNSTNTKFC YYNNYSLSQP RFFCKNCRRY 60 WTDGGSLRNI PIGGVSRKSK KSSSINTMKN NIISPKVQDI NNNNNNNNPN NKGVDQDLNL 120 DFSSDFKIIS ELIQVPNNNS FMPIMPNISN PNSIYLFSSN LDHGLIGSSS ISDGGYECHN 180 IIQDLQVCTS TTTSGGILFP FEDLKQVSNT SEQSRDGESS SNGYWDVILG GN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015084663.1	1e-169	dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	M1A4Z8	1e-124	M1A4Z8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400014843	1e-125	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	1e-31	Dof family protein