PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g016210.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 335aa    MW: 37949.9 Da    PI: 4.7951
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g016210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.1e-10270317653
                       S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
          Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                       +++k qle+Le+++++++ p+ +++  + + ++L+ ++V  WF  rR 
  Sopen08g016210.1 270 RLKKVQLETLEQVYRRSKRPTNAMISSIVHVTNLPRKRVLKWFEERRS 317
                       57899******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.831262322IPR001356Homeobox domain
SuperFamilySSF466897.7E-10264327IPR009057Homeodomain-like
CDDcd000863.12E-7265316No hitNo description
SMARTSM003892.8E-4268326IPR001356Homeobox domain
PfamPF000462.3E-7270317IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-9270319IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASSSTTLGI SIRLGCSSNE HLMLVYPRSR TNIALPFHSY SSRLVTFSRR RNNSAITSSN  60
KKKKSPPRKD TEEVDDIDED AFEALFQLLE EDLKNDELSL DDDDITEEDL AKLERELEEA  120
LKDDELLGEI DSIANENTES SMAKDEEAVA EDANGDDDDE DVDMLVKLKN WQLKKLAYAL  180
RKGRRKLNIK NLAADLCLDR AVVLEMLRNP PPNLVLLSAA LPDEPVPRML EAASKPLETV  240
PIEMSDAAKT DAKVETPVHV MQSNWSAQKR LKKVQLETLE QVYRRSKRPT NAMISSIVHV  300
TNLPRKRVLK WFEERRSEEG VPAHRLPYQP SSISE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14863RRRNNSAITSSNKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085680.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A3Q7HP780.0A0A3Q7HP78_SOLLC; Uncharacterized protein
STRINGSolyc08g061140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.13e-66overexpressor of cationic peroxidase 3