PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g018260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 604aa    MW: 68787.1 Da    PI: 5.8066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g018260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11335378654
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++Er+RR+++N+++  Lr l+Pk +      Kl+ a+iL  A+eY+ +L
  Sopen08g018260.1 335 LMAERKRRKKLNERLYALRALVPKiS------KLDRASILGDAIEYVMEL 378
                       589*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.5E-176153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.44329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-12331383No hitNo description
SuperFamilySSF474593.14E-16332392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9335379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16336392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MELMHLMERL RPIMSLKSWD YCVLWKLSED QRFLEWICCC CGGAEKNMHG CEQEIFFPDS  60
STSTCRDVMF QHPTTTACNL LAQVPPSLAL DCGVYAQTLL SNQAKWMNFV PFSESNISNE  120
IMGTRALIPS PLGLLELFST QQLAEDEKVI EFVSAQCNMY LEQQAMMNST FSNGVEENNT  180
SKPFPTEGER DGDDHIKDSQ NHYKQRVSPA ATSDHLSYDF PLKRKQLDTC SMNFLPPFST  240
YSTPEVDNNT GGNMLFDQST SDMTHFSENR YMSEMDAYLQ KQMMRSSSTQ AGIDDESVKH  300
DNGRSNSGSD SDQNEEEDDP KYRRRNGKGP QSKNLMAERK RRKKLNERLY ALRALVPKIS  360
KLDRASILGD AIEYVMELEK QVKDLQLELE EHSDDDGTGG GRNPDQIHPV VLSQNGTKNR  420
PKSDNGKLTN GSQREISTNS NGSADPSRKN QDVEENDKLQ QMEPQVEVAQ LDGNEFFVKV  480
FREHKAGGFV RTLEALNSLG LEVTNVNATR HTCLVSSIFK VEKRDNEMVQ ADHVRNTLLE  540
LTRNPSRGWS EMGRASSDNI NNNYNNNANG TTDYHQHQQH DHHLDNNNQH KQTNSHHFHR  600
HHHH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322343RRRNGKGPQSKNLMAERKRRKK
2337344ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083948.20.0transcription factor ABORTED MICROSPORES isoform X2
TrEMBLA0A3Q7HQ200.0A0A3Q7HQ20_SOLLC; Uncharacterized protein
STRINGSolyc08g062780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-134bHLH family protein