PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g018610.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 475aa MW: 52726.4 Da PI: 8.9275

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g018610.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sopen08g018610.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	12.6	0.00042	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Sopen08g018610.1 153 WKCEKCSKRYAVQSDWKAHSKIC 175 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.63E-6	76	99	No hit	No description
Pfam	PF12171	7.5E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	77	99	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.1E-4	141	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.63E-6	148	173	No hit	No description
SMART	SM00355	130	153	173	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MLGDDSMSNL TSASNEASIS STNNRIEIGS HVLYPQLQNI QTQPPPNKKK RNLPGNPDPE 60 AEVVALSPRS LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSN KEVKKKVYVC 120 PEASCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKICGTREY 180 RCDCGTLFSR RDSFITHRAF CDALTEESSR TIIPPPNSST SHHLNLHTLQ NFQMKQEQQQ 240 QQQQSNDLSS QLFIQNPNSN SSNMFGALPP HMSATALLQK AAQIGVTSSS HTANNMSATT 300 FFSPTTSTAS GIAMSGSGSG AGGGDIASRQ YHPFENNNNN NNTNTDFVTG NTSFHDFGAS 360 VTPGFMEQVH DMQNMMATTA PSLPCTSFDD GFGRGAQLMR QGKENNEGLT RDFLGLRAFP 420 HHRDFLSTTT PPAALHYNMG SSSAAAAPAS FDQHQHHHHH HQNQNQNQNQ SPWQN

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MLGDDSMSNL TSASNEASIS STNNRIEIGS HVLYPQLQNI QTQPPPNKKK RNLPGNPDPE  60
AEVVALSPRS LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSN KEVKKKVYVC  120
PEASCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKICGTREY  180
RCDCGTLFSR RDSFITHRAF CDALTEESSR TIIPPPNSST SHHLNLHTLQ NFQMKQEQQQ  240
QQQQSNDLSS QLFIQNPNSN SSNMFGALPP HMSATALLQK AAQIGVTSSS HTANNMSATT  300
FFSPTTSTAS GIAMSGSGSG AGGGDIASRQ YHPFENNNNN NNTNTDFVTG NTSFHDFGAS  360
VTPGFMEQVH DMQNMMATTA PSLPCTSFDD GFGRGAQLMR QGKENNEGLT RDFLGLRAFP  420
HHRDFLSTTT PPAALHYNMG SSSAAAAPAS FDQHQHHHHH HQNQNQNQNQ SPWQN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-34	149	210	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-34	149	210	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085741.1	0.0	protein indeterminate-domain 12-like
Swissprot	Q8H1F5	1e-117	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	M1AER7	0.0	M1AER7_SOLTU; Uncharacterized protein
STRING	Solyc08g063040.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-114	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]