PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g019610.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 208aa    MW: 23507.4 Da    PI: 6.7551
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g019610.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+l++++  +G++ +W + +++ g++R++k+c++rw++yl
  Sopen08g019610.1 14 RGQWSPEEDEILKNYIFNHGNPgSWISLPKRAGLNRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding48.91.5e-1569111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g++T++Ed  +  + +qlG++ W+ Ia++++ gRt++++k++w++
  Sopen08g019610.1  69 GNFTQDEDNTICSLYNQLGSR-WSVIASKLP-GRTDNEIKNHWNS 111
                       79*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.248962IPR017930Myb domain
SuperFamilySSF466891.32E-2612109IPR009057Homeodomain-like
SMARTSM007172.2E-101364IPR001005SANT/Myb domain
PfamPF002496.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-221569IPR009057Homeodomain-like
CDDcd001671.92E-71762No hitNo description
PROSITE profilePS5129420.89263117IPR017930Myb domain
SMARTSM007177.4E-1367115IPR001005SANT/Myb domain
PfamPF002492.0E-1369111IPR001005SANT/Myb domain
CDDcd001671.82E-970113No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVRAPCCDKS KVKRGQWSPE EDEILKNYIF NHGNPGSWIS LPKRAGLNRC GKSCRLRWLN  60
YLRPNIKLGN FTQDEDNTIC SLYNQLGSRW SVIASKLPGR TDNEIKNHWN SKLKKKVSAT  120
KEAMKLPIPS SDSADKNMVE TGEKNPRFTQ EEDHSKISPS IEGSTSFETC SSPLDDLAWF  180
ESFFPMDSNT SDGIWSTQLD GIDDLLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-241411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084319.11e-153transcription factor MYB36-like
SwissprotQ9M2Y99e-57RAX3_ARATH; Transcription factor RAX3
TrEMBLK4CLH01e-147K4CLH0_SOLLC; Uncharacterized protein
STRINGSolyc08g065910.1.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-59myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]