PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g019870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 367aa    MW: 43388.9 Da    PI: 7.4136
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g019870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-11161202347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE e+l+++ k++G++ Wk+Ia ++g  + + ++k+ w+ +
  Sopen08g019870.1 161 KWTEEECEILLKLQKEHGNN-WKRIADELG--KHRRHVKDTWRRL 202
                       8*****************99.********9..6778999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.007185156IPR001005SANT/Myb domain
PROSITE profilePS5129412.562155207IPR017930Myb domain
SMARTSM007175.5E-7158205IPR001005SANT/Myb domain
SuperFamilySSF466893.66E-11159216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-10161213IPR009057Homeodomain-like
CDDcd001672.68E-6161203No hitNo description
PfamPF139211.8E-13162220No hitNo description
PROSITE profilePS500908.235204272IPR017877Myb-like domain
SMARTSM007170.028208274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-8214276IPR009057Homeodomain-like
SuperFamilySSF466893.59E-6252327IPR009057Homeodomain-like
PROSITE profilePS500907.143274327IPR017877Myb-like domain
SMARTSM0071754278329IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MYDTEDRHED VDLSSPIEIE EKKNTDRGNI KKTKSVKLGR NSEDPTHTHE KNGKRVRFSG  60
QVQIFPSLNH PSDEKHEIEE ENLLQGKRFS KLEDEIVKEA VHKYIELHNL GEQGLKKVLN  120
ARSYPEIKGC WKEIGRSIPY RPTIAVYSRA QILFRRSESR KWTEEECEIL LKLQKEHGNN  180
WKRIADELGK HRRHVKDTWR RLKQSNQNKG QWTQEEYQNL FDLVNTDLRL KLSEEKKSKH  240
GMLRDNIAWN AISENLSTRN PTNCCLKWYN QLTSSMVDKG EWADVDDYRL IDALFELDAS  300
CIEDVDWDNL LDHRHGEICR KRWNQMILHI GQLGNKSFVD QVEVLAKRYR PDLVEVREAW  360
DNKPIVP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084447.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A3Q7HNG30.0A0A3Q7HNG3_SOLLC; Uncharacterized protein
STRINGSolyc08g066190.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-125MYB_related family protein