PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g020300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18479.1 Da    PI: 9.3213
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g020300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.11.3e-14449348
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                      +e+k  r+vtfskR+  ++ KA E S L++aev + ++s++g+ y 
  Sopen08g020300.1  4 VESKDARYVTFSKRKVSLFNKATEFSCLTGAEVGIFLISPSGRPYS 49
                      799***************************************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.59E-16178IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-11153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.68154IPR002100Transcription factor, MADS-box
PfamPF003193.7E-16449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKLVESKDAR YVTFSKRKVS LFNKATEFSC LTGAEVGIFL ISPSGRPYSH ASTTIESITH  60
KFLQWKLENP NVANVEKSNV FKTFDDLYEE VQIMNEKENN RKWRHKILYP GSEAPPDKQR  120
LEQLVAQKLR LEKIKEEAKN YVLAEKFEFD LNVVPGSGTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084332.11e-116agamous-like MADS-box protein AGL29
TrEMBLM0ZZJ73e-93M0ZZJ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000114276e-94(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-18AGAMOUS-like 29