PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g022220.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 196aa    MW: 22985.5 Da    PI: 10.1349
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g022220.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.83.5e-0971378128
               NAM   8 hPtdeelvveyLkkkvegkkleleevikev.d...iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                       hP d+e++ + L k v gk+++ ++++ +v d   i  + P+++ +++k++++++   ++ ++k++ +  +++  + g+Wk t k k++++++
  Sopen08g022220.1   7 HPMDKEMM-NNLVKYVMGKPFPGKHTVMDVdDvygIRIFSPSQILESTKGTNNNIRLMITFQNKENCKVFASKE-APGFWKCTPKRKSIFDAN 97 
                       9*******.669999*****88766655553422266679***9766666555554444444444444455554.56***************9 PP

               NAM  97 gelvglkktLvfy........kgrapkgektdWvmheyrl 128
                       ++++g  k+  +         ++++++ ++++W + ey l
  Sopen08g022220.1  98 KRHIGNIKISWYCyynvddgrDKSSSRLRQSEWQIREYYL 137
                       999998887544345888554345556679********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.5861160IPR003441NAC domain
SuperFamilySSF1019413.01E-97154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGKVTRHPMD KEMMNNLVKY VMGKPFPGKH TVMDVDDVYG IRIFSPSQIL ESTKGTNNNI  60
RLMITFQNKE NCKVFASKEA PGFWKCTPKR KSIFDANKRH IGNIKISWYC YYNVDDGRDK  120
SSSRLRQSEW QIREYYLTSK YLPQSKVERK NVLLTMMIKT KAAANNDNNN NNNDEKMQRI  180
ILDKQEIMQS LQCLQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774642.11e-147uncharacterized protein LOC114078274
TrEMBLA0A3Q7HPK21e-127A0A3Q7HPK2_SOLLC; Uncharacterized protein
STRINGSolyc08g068380.2.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14078510