PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g024870.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BBR-BPC
Protein Properties Length: 219aa    MW: 24164.5 Da    PI: 10.3618
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g024870.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind198.85.9e-6155219137301
         GAGA_bind 137 ieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnG 228
                       ++ +a+++k kk+kk++ ++ ++ +++  k+k+ ++ks  ++k++++   r  +  k+   v    s D s+lP P CsCtG++r+CYk G G
  Sopen08g024870.1  55 VKFKAKSQKMKKNKKTSMNGIRETVSELLKEKRFENKSSASKKPKGEAkCREATVTKNPSSVYGRASADFSGLPQPFCSCTGVSRRCYKCG-G 146
                       222222222222222222222222222223333333333333333333356888899999999**************************99.9 PP

         GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       GWqS+CCtt++S yPLP ++ ++g R agrKmS+ga++klL  La+eG+dlsnpvDLkdhWAkHG nkf+t++
  Sopen08g024870.1 147 GWQSSCCTTSLSEYPLPFNPSKPGNRKAGRKMSNGAYNKLLCTLATEGHDLSNPVDLKDHWAKHGSNKFITLK 219
                       ***********************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.3E-3920219IPR010409GAGA-binding transcriptional activator
PfamPF062178.7E-5544219IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MASQVNHKEE TFDSHFPWIH RDNFPPATQF GSKSKPCAAV PIRSVAPTGE QNVDVKFKAK  60
SQKMKKNKKT SMNGIRETVS ELLKEKRFEN KSSASKKPKG EAKCREATVT KNPSSVYGRA  120
SADFSGLPQP FCSCTGVSRR CYKCGGGWQS SCCTTSLSEY PLPFNPSKPG NRKAGRKMSN  180
GAYNKLLCTL ATEGHDLSNP VDLKDHWAKH GSNKFITLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084034.11e-163protein BASIC PENTACYSTEINE7-like
RefseqXP_027775057.11e-163protein BASIC PENTACYSTEINE7-like
SwissprotO822862e-46BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLH1ZN901e-160H1ZN90_SOLLC; GAGA-binding transcriptional activator
STRINGSolyc08g076230.1.11e-161(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137141415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.42e-48basic pentacysteine 7