PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g024950.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 841aa    MW: 93338.3 Da    PI: 4.841
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g024950.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-19104159156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ ++++  q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Sopen08g024950.2 104 KKRYHRHSVRQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 159
                       6888999**********************************************998 PP
2START153.71.6e-483065331206
                       HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-S CS
             START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddke...qWdetla 77 
                       ela++ ++elvk+ ++++p+W + s ++ g+evl  +e s+               ++ea r s+vv+m++ +lv  +ld+++    +   + 
  Sopen08g024950.2 306 ELALSSMDELVKMCTSSDPLWIRAS-NDSGKEVLNVEEYSRMfpwpvgvkqnaneLKIEATRSSAVVIMNSITLVDAFLDTNKcieLFPSIIS 397
                       578999*******************.77777777777776667778889*********************************99999999999 PP

                       EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
             START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                       +a+t++v++sg      g lqlm++e+q+l+plv+ R+ +f+Ry++q  ++g+w+ivd  +ds  ++   +++   +++pSg++i++++ng+s
  Sopen08g024950.2 398 RAKTIQVVTSGvsghasGSLQLMFMEMQVLTPLVStRECYFLRYCQQnVEEGSWAIVDFPLDSLHNNF-PPPFPYFKRRPSGCIIQDMPNGYS 489
                       ***********************************************99***********99988877.57777777**************** PP

                       EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       +v+wveh++++++ + ++++++v sg+a+ga++w++ lqrqce+
  Sopen08g024950.2 490 RVIWVEHAEVEENPVNQIFNHFVTSGVAFGAQRWLSILQRQCER 533
                       ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-2090162IPR009057Homeodomain-like
SuperFamilySSF466892.8E-1893162IPR009057Homeodomain-like
PROSITE profilePS5007116.584101161IPR001356Homeobox domain
SMARTSM003899.5E-19102165IPR001356Homeobox domain
CDDcd000861.29E-17104162No hitNo description
PfamPF000464.4E-17104159IPR001356Homeobox domain
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PROSITE profilePS5084841.021297536IPR002913START domain
SuperFamilySSF559619.48E-33298535No hitNo description
CDDcd088752.12E-110301532No hitNo description
PfamPF018521.9E-40306533IPR002913START domain
SMARTSM002347.0E-30306533IPR002913START domain
SuperFamilySSF559612.06E-18560729No hitNo description
SuperFamilySSF559612.06E-18766806No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MFGDCQLFSS MGMGGNNNNN NNVSSDTLYS SSIQNPNFNF MTMGGNSLPF NIFPPNNIIP  60
EENGLFKNKE EMDSGSGSEH IEGMSGNELE PEQQQQQQQQ GGKKKRYHRH SVRQIQEMEA  120
LFKECPHPDD KQRLKLSQDL GLKPRQVKFW FQNRRTQMKA QQDRSDNVIL RAENDNLKNE  180
NYRLQAALRS IMCPTCGGPA MLGEMGYDEQ QLRLENARLK EEFERVCCLV SQYNGRGPMQ  240
GLGPPNPLLP PSLELDMSIN NFTSKFEDQP NCADMVPVPL LMPDQNNSQF SGGPMILEEE  300
KSLAMELALS SMDELVKMCT SSDPLWIRAS NDSGKEVLNV EEYSRMFPWP VGVKQNANEL  360
KIEATRSSAV VIMNSITLVD AFLDTNKCIE LFPSIISRAK TIQVVTSGVS GHASGSLQLM  420
FMEMQVLTPL VSTRECYFLR YCQQNVEEGS WAIVDFPLDS LHNNFPPPFP YFKRRPSGCI  480
IQDMPNGYSR VIWVEHAEVE ENPVNQIFNH FVTSGVAFGA QRWLSILQRQ CERLASLMAR  540
NISDLGVIPS PEARKSLMNL AQRMIKTFCM NISTCCGQSW TALSDSPDDT VRITTRKVTE  600
PGQPNGLILS AVSTSWLPYN HFQVFDLLRD ERRRAQLDVL SNGNSLHEVA HIANGSHPGN  660
CISLLRINVA SNSSQSVELM LQESCTDDSG SLVVYTTVDV DAIQLAMNGE DPSCIPLLPL  720
GFVITPINNG QVNMNNSDNV VSGTEANSSQ SSEKRQNSSS IQEYSGGCLL TVGLQVLAST  780
IPSAKLNLSS VTAINHHLCN TVQQINAALV AFYPDTEVTA PSSPPPQQPE SSKQADENSN  840
S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085654.10.0homeobox-leucine zipper protein HDG5 isoform X2
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0V0IWB50.0A0A0V0IWB5_SOLCH; Putative homeobox-leucine zipper protein HDG5-like
STRINGSolyc08g076370.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7