PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g024980.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 93aa MW: 10450.8 Da PI: 6.2256

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g024980.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.7e-31	1	52	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Sopen08g024980.1 1 MRWTSTLHAHFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 52 79*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.52E-14	1	53	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	1	52	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.1E-27	1	52	IPR009057	Homeodomain-like
Pfam	PF00249	9.0E-7	1	51	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MRWTSTLHAH FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKTTDKSA 60 SSGQSEVFDN LSSGDTSEEL MVDEYFDSKS KLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-19	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-19	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-19	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-19	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-19	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-19	1	54	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-19	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-19	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-19	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-19	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-19	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-19	1	54	5	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	3e-46	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015083866.1	6e-62	probable transcription factor KAN2
Swissprot	Q9C616	5e-41	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A3Q7HRP2	2e-59	A0A3Q7HRP2_SOLLC; Uncharacterized protein
STRING	Solyc08g076400.2.1	4e-60	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-43	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]