PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g025150.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 495aa    MW: 55479.1 Da    PI: 4.7206
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g025150.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.2e-35261172102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sws + +sfv++d+ efak++LpkyFkhsnf+SFvRQLn+YgF+kv ++          w+F+++ F +g+k+ll
  Sopen08g025150.1  26 FLMKTYDMVDDPSTDKIVSWSPTDSSFVIWDPPEFAKQLLPKYFKHSNFSSFVRQLNTYGFRKVGSDL---------WKFSNDGFIRGQKHLL 109
                       9********************999****************************************9887.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r+k 
  Sopen08g025150.1 110 KNISRRKP 117
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.6E-6122115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.98E-3622115IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-3923115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDAGGGSPAP EITPAPMPSS NAIPPFLMKT YDMVDDPSTD KIVSWSPTDS SFVIWDPPEF  60
AKQLLPKYFK HSNFSSFVRQ LNTYGFRKVG SDLWKFSNDG FIRGQKHLLK NISRRKPAHG  120
QQQQQQQQQQ QLHGQSASVG ACVEVGNFGL EKEVEWLKRD KNVLMQELVK LRQHQQTTDD  180
QMQNMVQNLQ IMEQRQQQMM SFLAKAVNSP GFFAQFVQQQ NDNNKRKMEG KKKRRIRQDF  240
PSDDHSVSPA DGQLVKYQPI MNETAKGMLT QITKLDSSPR LENFSNSPES PPIGDAFDGR  300
SNSRISGVTL QEVSPAFSQP FASTTSAIAG QSSLSANIQF SESSSPIGAQ DLPPIVPFSS  360
DMIMPMPSQL QEIVPENNMD INGTERGNDS FMDPTLWGNG ELPLENDIFP PDLQIKWESA  420
LVDDIGEPPS VGDPSWEKFL QSLYPPTETE EMGSVETEND KTTETELLGN GWYNVQHMEH  480
LTEQMGLLTS NTKKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-26511510129Heat shock factor protein 1
5d5v_B1e-26511510129Heat shock factor protein 1
5d5v_D1e-26511510129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230234KKKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325565.20.0LOW QUALITY PROTEIN: heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A3Q7HTQ40.0A0A3Q7HTQ4_SOLLC; Uncharacterized protein
STRINGSolyc08g076590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-127heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]