PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g025340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 328aa    MW: 36576.2 Da    PI: 6.5138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g025340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14116167155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Sopen08g025340.1 116 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 167
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.96E-13114171No hitNo description
SuperFamilySSF474596.54E-17114184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.389115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13116183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MALEALSTNE LLNFIIYDTI STTTTTNSNN NLDENALFFD NHEENNAFLL KPQDFCTTTT  60
PLEQQYSTAA SVPRPESSRE KNNLSVAAQS GGGGGGRKKR RRRPKICKNK EEAENQRMTH  120
IAVERNRRKQ MNEHLSVLRS LMPESYVQRG DQASIVGGAI EFVKELEHIL QSLEAQKFAL  180
LQQQEGGTSN NTGDDCDGGK IKVSNADYVG TPFAQFFSYP QYTCCELPNK YTSKSKAAIA  240
DIEVTLIETH ANVRILSRRR FRQLSKLVAA FQSLYISVLH LNVTTLDPLV LYSISVKVEE  300
GCQLNSADDI AGAVHHMLRI IEEEAATL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102RKKRRRR
297102KKRRRR
3116127RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612330.0GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084947.10.0transcription factor bHLH71-like
SwissprotQ9C7T46e-75BH096_ARATH; Transcription factor bHLH96
TrEMBLG8Z2550.0G8Z255_SOLLC; Hop-interacting protein THI018
STRINGSolyc08g076820.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]