PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g027560.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 214aa MW: 23897.9 Da PI: 7.6311

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g027560.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	219.9	7.5e-68	17	177	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekeesasts 95 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll l + + ++h+++++ + ll+e +++ n+ +n++++ ++ + Sopen08g027560.1 17 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPS----TNHHHFGHTYFSPshnLLDEISNATPNFLMNQSNSAHEFVQ 105 68*************************************9444333....33444555544432337777777777777777666666666 PP YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + +++pr+pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Sopen08g027560.1 106 LPA----RPGFDDLPRPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 177 655....55788999999989***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-65	17	177	IPR006780	YABBY protein
SuperFamily	SSF47095	2.23E-8	118	171	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.5E-5	125	171	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSSSNSLSLD HLPPPPPSEQ LCYVHCNVCD TVLAVSVPCT SLFKTVTVRC GHCTNLLPGW 60 LLPSTNHHHF GHTYFSPSHN LLDEISNATP NFLMNQSNSA HEFVQLPARP GFDDLPRPPP 120 VVNRPPEKRQ RVPSAYNRFI KEEIQRIKAG NPDISHREAF SAAAKNWAHF PHIQFGLMPD 180 QTVKRTNVRQ QDGEDVLTKD GLFNTSANVS VSPY

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667760	0.0	KJ667760.1 Solanum sisymbriifolium YAB1 protein mRNA, complete cds.
GenBank	KJ667761	0.0	KJ667761.1 Solanum aethiopicum YAB1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015083525.1	1e-159	protein YABBY 4-like
Swissprot	A2X7Q3	3e-79	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	3e-79	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	M1A0N9	1e-147	M1A0N9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400012083	1e-148	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	8e-70	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]