PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g028160.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRF
Protein Properties Length: 202aa    MW: 23232.8 Da    PI: 9.3147
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g028160.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.55e-23110153144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       ++ep+rC+RtDGKkWRCs+ v++++k+CE+H+hrgr+rsrk +e
  Sopen08g028160.1 110 EPEPRRCKRTDGKKWRCSKGVVQNQKYCEKHMHRGRQRSRKCVE 153
                       69**************************************9776 PP
2QLQ41.54.2e-154983337
               QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                      FT  Q q+L++Q  +yKy+ a++PvP +L+ +i+k
  Sopen08g028160.1 49 FTFPQRQELEQQFFIYKYIEAGLPVPTHLIIPIYK 83
                      9999*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.7E-44783IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.0174883IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-114981IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.706110154IPR014977WRC domain
PfamPF088791.1E-18111152IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MELKISPPKS IATKKVCYNV SNGGEKCSIE LGLNLELSYS NFSTNGYGFT FPQRQELEQQ  60
FFIYKYIEAG LPVPTHLIIP IYKSFTCSLK GLHDVMGYGH MCWEHKSRME PEPRRCKRTD  120
GKKWRCSKGV VQNQKYCEKH MHRGRQRSRK CVELTSSRDI CCSDSSKILS QLCQIHQKCT  180
TGKVSDMPPL IFLKSSNNID HN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083901.11e-151growth-regulating factor 10-like
SwissprotQ6EPP98e-42GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A3Q7HT151e-101A0A3Q7HT15_SOLLC; Uncharacterized protein
STRINGSolyc08g079800.2.11e-136(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1447199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-33growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]