PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g028640.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 173aa    MW: 18850.3 Da    PI: 5.0073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g028640.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.8e-16855355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+ +l+g
  Sopen08g028640.1  8 FRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAAMALKG 55
                      79**9.55.6*********843...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.59E-16663No hitNo description
PROSITE profilePS5103219.414763IPR001471AP2/ERF domain
SMARTSM003803.0E-27771IPR001471AP2/ERF domain
PfamPF008471.7E-9855IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-25863IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18864IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGGKHAIFRG IRCRSGKWVS EIREPRKTTR IWLGTYPTPE MAAAAYDVAA MALKGNDAVI  60
NFPGNINSYP SLPPSPAAAD IRKAAATAAA LMKIESGETT LGTQPGTDEH QSLGNVHMME  120
TRDHEYIDEE ALFDMPNLLV DMAEAMMVSP PRMSSPRSDD SPGHSDAENL WSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14167876Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-178HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084540.11e-127ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ903e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A3Q7HTS91e-102A0A3Q7HTS9_SOLLC; Uncharacterized protein
STRINGSolyc08g080290.2.11e-103(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-34ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]