PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g029930.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 223aa    MW: 25490.9 Da    PI: 8.9706
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g029930.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.3e-32144202159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDg++WrKYGqK vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+
  Sopen08g029930.1 144 LDDGFKWRKYGQKAVKNSTHPRSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGIHNHP 202
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32131202IPR003657WRKY domain
SuperFamilySSF1182904.58E-28136203IPR003657WRKY domain
PROSITE profilePS5081128.116139204IPR003657WRKY domain
SMARTSM007745.9E-37144203IPR003657WRKY domain
PfamPF031062.5E-25145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDAGEELHLP PPPPPPPLPP PTTLLSPANF YMQQPNDQLA MQNNCNSSQV GLICDNIDWA  60
GLLSGSSSIN NNNESIATTP NVSINPRNMN MNMNTNMNMM EGGEQHQQPL LQLQEHNFRR  120
EKGRKRKYVP PRVAFHTRST EDILDDGFKW RKYGQKAVKN STHPRSYYRC THHTCNVKKQ  180
IQRLSKDTSI VVTTYEGIHN HPCEKLMETL SPILKQLQFL SRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-24132201271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085317.11e-168probable WRKY transcription factor 45
TrEMBLA0A3Q7HU301e-116A0A3Q7HU30_SOLLC; Uncharacterized protein
STRINGSolyc08g081630.1.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63742433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.11e-56WRKY DNA-binding protein 56