PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g030500.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 247aa    MW: 28107 Da    PI: 9.5887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g030500.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-1861111256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Sopen08g030500.1  61 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 111
                       59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.22E-1660120No hitNo description
SuperFamilySSF541712.29E-2261118IPR016177DNA-binding domain
SMARTSM003801.5E-3561124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-3161119IPR001471AP2/ERF domain
PROSITE profilePS5103223.23561118IPR001471AP2/ERF domain
PRINTSPR003673.6E-106273IPR001471AP2/ERF domain
PfamPF008478.4E-1362111IPR001471AP2/ERF domain
PRINTSPR003673.6E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTNSPVFEPL GTSVYLRQRD LLHKFCQENI ANIPIPTTSK TIPFRNSLYT QSYKFPEKKK  60
LYRGVRQRHW GKWVAEIRLP QNRMRVWLGT YETAEAAAYA YDRAAYKLRG EYARLNFPNV  120
RDPSKLGFGD GEKMNAVKNA VDAKIQAICQ KVKREKAKKA AKKKSENESK VKETMDSSSS  180
TTTTTTTTTT MISPSVSEDG LWRSEDSTCS VFGDCLKDPL MESEFDSCSL ARMPSFDPEL  240
IWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2158118263ATERF1
3gcc_A7e-2158118263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083644.10.0ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W22e-63ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLM1AW161e-147M1AW16_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000316851e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]