PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen08g031140.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 301aa MW: 33205.5 Da PI: 7.8427

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen08g031140.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.2e-40	24	85	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++ ++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss Sopen08g031140.1 24 KDQVVNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKKSSS 85 78999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-25	17	73	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-34	25	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEDIIGNTSK PNNCVERKLV RPQKDQVVNC PRCNSTNTKF CYYNNYSLSQ PRYFCKTCRR 60 YWTEGGSLRN IPVGGGSRKN KKSSSPYNHH VILNNKKLPD LVVPPPQPDN IDEYPERHFG 120 NRPHDQNPSK IILEGSQDLN LGFSSDFKTI TDLIQVPNYD GSNKDNNNIS TILPPPSSSS 180 SASSPSQLSA MELINGITNN NNNNSFMTMP NSVYNSSGFS LMPSLNFSLD HGIGNDVHHS 240 SSYGNNNNNL QETNANGRFL FPFVGLKQVS NNTSDGANEP SLGDQSTNGY WNGMLGGGGS 300 W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015083863.1	0.0	dof zinc finger protein DOF4.6-like
TrEMBL	A0A3Q7IR87	0.0	A0A3Q7IR87_SOLLC; Uncharacterized protein
STRING	Solyc08g082910.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-32	Dof family protein