PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen08g031350.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24680.8 Da    PI: 4.9425
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen08g031350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.81.2e-202376356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       R++f++eq++ Le++Fe ++ p  +++++LAk+lgL+ rqV +WFqN+Ra+ k
  Sopen08g031350.1 23 MRRRFNDEQIKSLENMFETESRPGLRTKQQLAKRLGLQPRQVAIWFQNKRARSK 76
                      699*************************************************99 PP
2HD-ZIP_I/II971.9e-3124114393
       HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       +rr+++eq+k+LE++Fe+e++   + K++la++Lglqprqva+WFqn+RAR k+kqlE +y++L+ +yd+l ++ e L+ke+e+L  +l++
  Sopen08g031350.1  24 RRRFNDEQIKSLENMFETESRPGLRTKQQLAKRLGLQPRQVAIWFQNKRARSKSKQLELEYRMLQISYDNLGSKYELLKKEHESLLIQLQR 114
                       79***********************************************************************************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-181080IPR009057Homeodomain-like
PROSITE profilePS5007117.6051878IPR001356Homeobox domain
SMARTSM003894.1E-172082IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-192384IPR009057Homeodomain-like
PfamPF000466.4E-182376IPR001356Homeobox domain
CDDcd000865.64E-162479No hitNo description
PRINTSPR000318.1E-64958IPR000047Helix-turn-helix motif
PROSITE patternPS0002705376IPR017970Homeobox, conserved site
PRINTSPR000318.1E-65874IPR000047Helix-turn-helix motif
PfamPF021831.7E-1178119IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAPTNSDMIW GESIMTSKCN DNMRRRFNDE QIKSLENMFE TESRPGLRTK QQLAKRLGLQ  60
PRQVAIWFQN KRARSKSKQL ELEYRMLQIS YDNLGSKYEL LKKEHESLLI QLQRLKKLME  120
KDDNEKDVTK KSETEVKQDD FAPEFGSRGI DYLGAESDIL DMAQIADGLT EIENEFNFES  180
RTFLHDTGCG NFSVETLLSV TQSFCQPKMN DE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084842.11e-157homeobox-leucine zipper protein ATHB-7-like
SwissprotP468972e-36ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A3Q7HX641e-132A0A3Q7HX64_SOLLC; Uncharacterized protein
STRINGSolyc08g083130.2.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-39homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]