PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g001040.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 326aa MW: 36402.8 Da PI: 8.3364

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g001040.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWtpeLH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ++R+ Sopen09g001040.1 62 ARLRWTPELHLRFVHAVERLGGQDRATPKLVLQMMNIKGLSIAHVKSHLQMFRS 115 69***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-29	58	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.958	58	118	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-15	61	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-22	62	117	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	63	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MLEDSGETGC NSKTSCNFEN EVLEENDASS KFKDGGSSSE STLEESEKIK PCVRPYVRSK 60 MARLRWTPEL HLRFVHAVER LGGQDRATPK LVLQMMNIKG LSIAHVKSHL QMFRSKKTDD 120 QSQGIGHHHK LFMEGGDPNI FNMIQFPRFP TYHQRLNSTF RYGDASWNCH GNWMPSNTMG 180 QMIPSFINET STIQRNEIKD VTGSSIGSPS GELTRLFHIA SKAQARAFVG NGITSPPNLE 240 RTITPLKRKV SYSDQVDLNL YLGVKPRNGF LTPNLDDNDN DNGSSLSLSL SSPLSYSRAT 300 RFIEDANIDG KTENARRGAS TLDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015087329.1	0.0	putative two-component response regulator ARR21
TrEMBL	M1CJ60	0.0	M1CJ60_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400068508	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	7e-51	G2-like family protein