PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g002370.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8975.76 Da    PI: 10.4028
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g002370.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.81e-421480470
              S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                      + ve+kG+nPGlivl+vvgglll+flvgny+ly+yaqk+lPP+kkkPvskkk+k+e+lkqGv++PGe
  Sopen09g002370.2 14 KDVEVKGFNPGLIVLIVVGGLLLTFLVGNYLLYMYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE 80
                      679***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0081580No hitNo description
PfamPF046893.9E-411680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MDFEDHDNVK NMAKDVEVKG FNPGLIVLIV VGGLLLTFLV GNYLLYMYAQ KTLPPKKKKP  60
VSKKKMKKER LKQGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-118HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246674.16e-51DNA-binding protein S1FA
RefseqXP_015086281.16e-51DNA-binding protein S1FA-like
SwissprotQ423375e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLA0A3Q7ISD51e-49A0A3Q7ISD5_SOLLC; Uncharacterized protein
STRINGSolyc09g007500.2.12e-50(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249