PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g002790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 519aa    MW: 58412.3 Da    PI: 6.5678
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g002790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.87e-10404451448
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       WT  E  +l+d+v+q+G g+W+ I +       +Rt+ ++k++w+++l
  Sopen09g002790.1 404 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssVHRTPVDLKDKWRNLL 451
                       ***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.444396455IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-13398458IPR009057Homeodomain-like
SuperFamilySSF466891.51E-16398459IPR009057Homeodomain-like
SMARTSM007171.2E-11400453IPR001005SANT/Myb domain
PfamPF002499.8E-8404451IPR001005SANT/Myb domain
CDDcd116606.22E-20404452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MMNQNSAYRS GFASLGVWFD ESETRDDHAS ISGVLCFDEK RVLKGMERKG ALYNIGSSIA  60
SKRENEINQD VLDLKRSQFE AGKIQAQNDL STPCEDYLLD IEFAESITNL DYGSSRGLLD  120
PILESQIPLS SCDGTDTCGM PYSAGLVVQE SQSQNAMFGL TNSELHDLSR DKCESQMLVE  180
YNAVKFPTAF NPGDISNVDD VAGFFAEAAA SEKMNDSMID HSALTSKGIS FMSTATQNER  240
QDVNCESFDM HESSEISPPV TSEAINIDNP VTQKRLRKPT RRYIDESSDL NAKRRKKRAE  300
VSTSAPESKN KLLKVRCQKK PRGESMEMVL FSEESSYEAI QVPFASLVNE ECDDWDASEA  360
IQVFKPHKEE PHKEATTVVN HEDDDVTPKK LVQDGVRRKH HRLWTVSEVR KLIDGVAQYG  420
VGRWSHIKKL YFSSSVHRTP VDLKDKWRNL LKATYLQKQS KSTEKGKHNL SWRPLPKSVL  480
HRVSELANMH PYPRNRRCKS SRSPCASSSP EHSNSSNIP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088498.10.0uncharacterized protein LOC107031587 isoform X2
TrEMBLA0A3Q7HWM80.0A0A3Q7HWM8_SOLLC; Uncharacterized protein
STRINGSolyc09g007990.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-26TRF-like 6