PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g002910.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 817aa    MW: 90049 Da    PI: 6.6914
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g002910.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-0885127347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Sopen09g002910.1  85 AWTRQEEESFFSALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 127
                       6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.41381132IPR017884SANT domain
SuperFamilySSF466895.08E-1081132IPR009057Homeodomain-like
SMARTSM007173.2E-682130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-584130IPR009057Homeodomain-like
CDDcd001678.93E-685128No hitNo description
PfamPF002493.3E-685127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MQMVQQVSLE RDTCLHPETF MGKDGLSGVT QHPAVALSVI PSNDHLASQQ SVLTHDHAVT  60
QLVPSSQDQV MLQLPAKRQP RQWAAWTRQE EESFFSALRQ VGKNFEKITS RVQSKNKDQV  120
RHYYYRLVRR MNKLLGPELC LDAKNSKDTN AAMLRWWSLL EKYSCKASKL HLKPRRFKIF  180
IETLESQLLK DRKKNVRRRP SQGESSATAA GSPSSHGRVS TNDSRTVKVV LLDNQDVQKF  240
GSGKGSSIKR HVMGVNRSNA KVDSSVKNAR HRRRTGSAST AAYKRWEKAA IAGVSLVADA  300
AEHLERATID KDVGLVQNSQ GINGFEHVGK NVHFLPTLSQ NLLNETNLQS CMKLKLQLFP  360
VDEGTRRALE MDNHNPYLEL TLSNRKKMSS VLEHLNRKWG SSSIATGELV LFPYHVQMEN  420
LVQSLRWTKD TTQSAADVHN LIGSPPVFRL RYGWFPNAEL GTPLELLSSA IPFMQNINPN  480
ITNENNAEIL ASSPGKLVRF SKEPLASNPR MTVTSSSIKL SGESNLQASM GLNTYTYDHD  540
GTLPLNRREN GDATTAEQAE MHDMQGNKAS ALSAGDWEDS LTNISVGDLL FDAPDDEETD  600
CIDSALCGSS HFLSQMPLSC DSFDAAIAAH IYKHQSKADS QMALPPQASS IWNAEDTCDA  660
FAFKKNVAFS DKSQCSSSNV GAENSQRIAQ SSSLVLDAVI KDLPGNMESF NGEPALDDAV  720
DECQSDAQAL DGSSKDLNGL SGIYWTDSLG PLELDAPSCR YHSEDITLSD SLGGFNRLIV  780
NSLDAFQNCS FFGLDKTEPG STVEPVKTSD LKIGAEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767598.10.0TSL-kinase interacting protein 1 isoform X3
RefseqXP_027767599.10.0TSL-kinase interacting protein 1 isoform X3
RefseqXP_027767600.10.0TSL-kinase interacting protein 1 isoform X3
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A3Q7HWQ20.0A0A3Q7HWQ2_SOLLC; Uncharacterized protein
STRINGSolyc09g008100.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86401719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1