PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g003600.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 179aa    MW: 20712.6 Da    PI: 9.9273
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g003600.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-203284456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      + +++++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k
  Sopen09g003600.1 32 KKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 84
                      55699***********************************************9 PP
2HD-ZIP_I/II121.25.4e-3931122293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       kk+rls++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ yd +++e+++L++ev +Lr+ lke
  Sopen09g003600.1  31 KKKRLSSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKAKQLERLYDSLKQDYDVVSREKQKLQDEVLALRAILKE 122
                       9**************************************************************************************88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-191588IPR009057Homeodomain-like
PROSITE profilePS5007117.3132686IPR001356Homeobox domain
SMARTSM003893.6E-172890IPR001356Homeobox domain
PfamPF000462.0E-173184IPR001356Homeobox domain
CDDcd000861.31E-153187No hitNo description
Gene3DG3DSA:1.10.10.601.4E-213393IPR009057Homeodomain-like
PRINTSPR000314.7E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000314.7E-66682IPR000047Helix-turn-helix motif
PfamPF021831.3E-786120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKHAMQTQHG GVQVPTMDNN NFVLNQHQLD KKKRLSSDQL ESLENSFQEE IKLDPDRKMK  60
LAKELGLQPR QIAVWFQNRR ARWKAKQLER LYDSLKQDYD VVSREKQKLQ DEVLALRAIL  120
KEQATKKQVN STVYTEISGE ETVESTSMPS SNKTITRGIT INGLNPVMPP YWATLPTYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087425.11e-123putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-51ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A3Q7HWL51e-117A0A3Q7HWL5_SOLLC; Uncharacterized protein
TrEMBLM0ZS811e-117M0ZS81_SOLTU; Uncharacterized protein
STRINGSolyc09g008810.2.11e-118(Solanum lycopersicum)
STRINGPGSC0003DMT4000069491e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-54homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]