PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g005070.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 452aa    MW: 51221.3 Da    PI: 4.7696
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g005070.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.92.9e-20171223154
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                       k r +Wt eLH++F+++veqL G  +  Pk+i elm+v+gLt+ +++SHLQk R
  Sopen09g005070.1 171 KYRTKWTDELHTKFMKVVEQL-GDGNCYPKKIFELMQVPGLTRIQIASHLQKCR 223
                       5699*****************.999***************************98 PP
2Response_reg32.16.1e-12211241106
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                       v++vd ++ + + ++ +l+  +y +v ++d++ +a+ +lkek+ +D+++l +  +++  ++ll +    +  +  +vv ++ +e  a++al+ 
  Sopen09g005070.1  21 VMLVDNDKEFTKKMTDFLTFYEY-KVVTVDTALAAMSMLKEKQkIDVMILNVHPSNIYSFDLLAQAVVLD--IVTLVVYDELNELVAKKALDK 110
                       89*********************.***************88888******************99877766..5555556777788999***** PP

                       TESEEEESS--HHH CS
      Response_reg  93 GakdflsKpfdpee 106
                       Ga   l Kpfd+e 
  Sopen09g005070.1 111 GAYLSLKKPFDEEI 124
                       *********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.8E-1318150No hitNo description
SuperFamilySSF521723.56E-1319145IPR011006CheY-like superfamily
PROSITE profilePS5011019.5420133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-621125IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.19E-622126No hitNo description
PROSITE profilePS5129411.991168227IPR017930Myb domain
SuperFamilySSF466891.16E-16169224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-20170224IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-18171224IPR006447Myb domain, plants
PfamPF002496.5E-7173222IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEGINNPMSS PYYGKIEHVH VMLVDNDKEF TKKMTDFLTF YEYKVVTVDT ALAAMSMLKE  60
KQKIDVMILN VHPSNIYSFD LLAQAVVLDI VTLVVYDELN ELVAKKALDK GAYLSLKKPF  120
DEEILQYLWQ IVLKRNTQQE KAREGSEMKN VSNINEGESQ SNATNMVVRR KYRTKWTDEL  180
HTKFMKVVEQ LGDGNCYPKK IFELMQVPGL TRIQIASHLQ KCRRNNWRSR KEQRYVCAPS  240
GHESKFGAMP RLQTNVLNPQ RNSDEIQKGS WYSFSTPDAN NVFARGDNSI QQEFNNNVGG  300
GLQPETLFGM SSSQELEGSI TGNTNYKPAW AFNNGDHDHA QYAYNNLNLN AAYGTIYSNN  360
KTLSGANTGN VQVDEYNVNA ENVAICSDNA MMSDTYVGNV AINGVGETNT NFQQYIDESD  420
IFATLCESDI DEADASEKED CEAYYLNTEY LL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767523.10.0two-component response regulator ARR11-like
TrEMBLM1DY301e-134M1DY30_SOLTU; Uncharacterized protein
STRINGSolyc09g010340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-24response regulator 2