PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g005380.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family E2F/DP
Protein Properties Length: 261aa    MW: 29456.4 Da    PI: 6.0707
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g005380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.83.2e-2260138571
           E2F_TDP   5 sLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       +Lr+++ +   +++k+e+ g++t++eva+e+++e               d+kn+rRR+YD lNVL+al++ie+ +++eirwkg
  Sopen09g005380.1  60 GLRQYSIM---VCKKVEDkGRITYSEVADEIIAElmtmensstvplnesDEKNIRRRVYDSLNVLMALDVIER-DRKEIRWKG 138
                       77777777...**************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.9E-913261IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.6E-3454142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.9E-2256138IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.58E-1659139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.3E-1860138IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011384.2E-37142259IPR014889Transcription factor DP, C-terminal
CDDcd144585.97E-29144246IPR014889Transcription factor DP, C-terminal
PfamPF087813.1E-31146258IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-35146259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMDGETSAST IQGINRRRSE GKSSFRATAD YDDKTLHVNQ LTQTSDTAKL KKGSKIVGGG  60
LRQYSIMVCK KVEDKGRITY SEVADEIIAE LMTMENSSTV PLNESDEKNI RRRVYDSLNV  120
LMALDVIERD RKEIRWKGLP NSDARDMEET KKGHAELLAK IGKKAAYLKD LEEQLASLQN  180
LKLRNEQSCK STNGPSQGFS LPFILVQTAP HAMVEVEISE DMQLVHFDFN SVPFSLHDDA  240
YVLKLMRNYE LLESESVSRT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2651145395PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754483e-73HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767526.10.0transcription factor-like protein DPA
SwissprotQ9FNY32e-84DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A3Q7IU120.0A0A3Q7IU12_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000230360.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1488399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.38e-87Transcription factor DP