PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g008530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 203aa    MW: 23288.2 Da    PI: 4.4738
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g008530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.74.1e-1328661048
                      HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHH CS
          Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWF 48
                      + +e Lee+F +n++p  + +e+L++ lgL+ +qVk+WF
  Sopen09g008530.1 28 QIIEKLEEVFSQNPNPENDVIEQLSEDLGLDATQVKIWF 66
                      56899********************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00211880IPR001356Homeobox domain
SuperFamilySSF466896.42E-102278IPR009057Homeodomain-like
CDDcd000861.77E-92766No hitNo description
PfamPF000461.5E-102866IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-112867IPR009057Homeodomain-like
PROSITE profilePS5007111.0943076IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTSQNDASVG STSGQHIGKS IFQHSYQQII EKLEEVFSQN PNPENDVIEQ LSEDLGLDAT  60
QVKIWFYDKG NDIKAQQILE EKSKIEHLKN KIMYSENFQM CLNLKQQFCA ASNNPEQQRA  120
ILQDLLNEYA KFGEDVMMIS KIIDHFIKDM EGYHDILFSE FESKLDSLGN YKDPKGLDLE  180
LRLGCYKDPN GLDLELKLGL KSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-111HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087606.21e-147homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
TrEMBLA0A3Q7IVK11e-138A0A3Q7IVK1_SOLLC; Uncharacterized protein
STRINGSolyc09g015110.1.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1522966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.13e-11homeodomain GLABROUS 11