PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen09g012960.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 105aa    MW: 12084.1 Da    PI: 11.6849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen09g012960.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.3e-054989954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       ++RR+r  + f eLr+++P       + ++    L ++ +YI+sL
  Sopen09g012960.1 49 KKKRRRRSSDEFGELRKIVPGG-----QLMNFYNLLDETADYINSL 89
                      69******************85.....4688888888888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.0234089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00964695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-850103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-75099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MNQQDKTNSR RVKHAAYASM ASVVGSKRAW SRAVLSKIRN RSLLLKKKKK KRRRRSSDEF  60
GELRKIVPGG QLMNFYNLLD ETADYINSLT SQVQVMKNIL NLLST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14654KKKKKRRRR
24752KKKKRR
34853KKKRRR
44854KKKRRRR
54954KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-178HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086956.25e-71transcription factor IBH1-like
TrEMBLM1A3T71e-55M1A3T7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000141792e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1175944