PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g014010.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 379aa MW: 43973.7 Da PI: 7.2429

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g014010.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.5	3e-15	2	48	10	56
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 eq+++L ++F+k+++p++++ +L ++ gL+ qVk+WFqNrRa+ k Sopen09g014010.1 2 EQIQRLDAFFKKCPHPDEDQQIQLGREPGLDHMQVKFWFQNRRAQAK 48 8*******************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.56	1	50	IPR001356	Homeobox domain
CDD	cd00086	8.58E-11	1	48	No hit	No description
SMART	SM00389	4.0E-4	1	54	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.64E-13	2	51	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-13	2	51	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-12	2	48	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MEQIQRLDAF FKKCPHPDED QQIQLGREPG LDHMQVKFWF QNRRAQAKDE KVSNLISHVL 60 GRPFVMDSNF APQISTLGSS SNSSDGSLLN QDICGSPIRY PPLRQENNHN NSNVHAHSMI 120 SPSPQEHDEC HHDSRQQTIM FETVVASMNE MVELWKMNDP FWVDSSSDRR CFIHREIYGR 180 KFSNQVLPPQ TSTGRIESSK DCGIVSMTAI DLIHNFLDPV TWVEHVQVYE KYQVNHIFRD 240 LLCDREAYGA KRWIVTLQRM CERFNFQMGS TYPTRHDFKG VFHDPEGLKN TIKVSQRMVK 300 SFFEILGMID NRGDFSISPQ LNRGDRISIR KNEEIIQPKG FIAIATTSLW LPLSFQDVCS 360 FFNNDKTRNQ SLHMSARFV

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MEQIQRLDAF FKKCPHPDED QQIQLGREPG LDHMQVKFWF QNRRAQAKDE KVSNLISHVL  60
GRPFVMDSNF APQISTLGSS SNSSDGSLLN QDICGSPIRY PPLRQENNHN NSNVHAHSMI  120
SPSPQEHDEC HHDSRQQTIM FETVVASMNE MVELWKMNDP FWVDSSSDRR CFIHREIYGR  180
KFSNQVLPPQ TSTGRIESSK DCGIVSMTAI DLIHNFLDPV TWVEHVQVYE KYQVNHIFRD  240
LLCDREAYGA KRWIVTLQRM CERFNFQMGS TYPTRHDFKG VFHDPEGLKN TIKVSQRMVK  300
SFFEILGMID NRGDFSISPQ LNRGDRISIR KNEEIIQPKG FIAIATTSLW LPLSFQDVCS  360
FFNNDKTRNQ SLHMSARFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886908.1	1e-168	homeobox-leucine zipper protein HDG8-like isoform X2
TrEMBL	A0A3Q7HMI1	1e-166	A0A3Q7HMI1_SOLLC; Uncharacterized protein
STRING	Solyc05g015030.1.1	1e-168	(Solanum lycopersicum)
STRING	Solyc08g062510.2.1	1e-166	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18594	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03260.1	1e-28	homeodomain GLABROUS 8