PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g021630.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 243aa MW: 27724.5 Da PI: 7.5044

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g021630.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.7	1.4e-26	74	160	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +++ r gCka++ vkke++gkw v+kl++eHnHel+ Sopen09g021630.1 74 YYSTYATHLGFIMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQSQ--NGKKKCRAIREGCKAMIIVKKEQSGKWLVAKLVKEHNHELV 160 8***************************************9988..888888899****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-25	74	160	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MAVDESNNHD DEMVQTSSPK EFTTNQDNAT DDVGIVETST EKEFTPNGLE VEGRSNMEPY 60 VGMEFESEEA AKAYYSTYAT HLGFIMRVDA FRRSMRNGEL VWRRLVCNKE GFSKSRQSQN 120 GKKKCRAIRE GCKAMIIVKK EQSGKWLVAK LVKEHNHELV VKPVNTPKGA ILCQTPDDKD 180 VKIRELTAEL QKERKRSAAL QEQLDMLLKD MEDHSDQLSK NINGIVKSVK ELESRKIVFP 240 NVR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015086379.1	0.0	protein FAR1-RELATED SEQUENCE 1 isoform X5
TrEMBL	A0A1S4D830	1e-139	A0A1S4D830_TOBAC; protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1U7YLL2	1e-139	A0A1U7YLL2_NICSY; protein FAR1-RELATED SEQUENCE 5 isoform X1
STRING	XP_009802876.1	1e-140	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-80	FAR1 family protein