PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen09g021650.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 261aa MW: 29732.8 Da PI: 7.1917

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen09g021650.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.6	3.9e-27	95	185	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ YA++vGF +r+++ ++s+ +++i +r++ C+k+g+ + k+++ r+ r++tr gCka++ vk +k++kw+vt++++eH+H+l+p Sopen09g021650.1 95 EFYDYYARRVGFIMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKNHHGPPRKARTSTREGCKAMMLVKVNKSDKWVVTRFVKEHTHQLVP 185 6********************************************9***************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-25	95	185	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MFEEEEPDLG EETSEIRIKA STALNPQNLV PSGTSKAASA VHTSDTHHFG VAVDLKAGVT 60 TIDCSAESQS VVCQDNVVPE PFIGMEFESE YAAKEFYDYY ARRVGFIMRI DQCRRSEVDK 120 RILSRRLSCN KQGYYVKMKN HHGPPRKART STREGCKAMM LVKVNKSDKW VVTRFVKEHT 180 HQLVPSGCSS GNAMDKKDRR IQELSMELEH QDKLCDLYRE QLVTFLENVE QQMELLSKKI 240 QVAVNNVKEV EAEVQKQPNS K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	0.0	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027767634.1	0.0	protein FAR1-RELATED SEQUENCE 2-like isoform X1
TrEMBL	A0A3Q7I1N9	0.0	A0A3Q7I1N9_SOLLC; Uncharacterized protein
STRING	Solyc09g057880.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-57	FAR1 family protein